WebNov 24, 2016 · CLfinder-OrthNet Synopsis. A pipeline to detect co-linearity in gene orders among multiple closely-related genomes (CLfinder) and build networks of orthologs, or … WebThe CLfinder-OrthNet pipeline provides a flexible and a modular toolkit to compare gene order, encode and visualize evolutionary paths among orthologs as networks, and identify all gene loci that...
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WebFeb 23, 2024 · CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology WebFeb 17, 2024 · ABSTRACT. We developed the CLfinder-OrthNet pipeline that detects co-linearity in gene arrangement among multiple closely related genomes; find ortholog … WebDec 18, 2024 · 57 CLfinder module, lineage-specific (ls) indicates no best-hit found for the query gene among all genes in 58 the target genome. 59 OrthNet: a network of orthologs, with gene loci as nodes, connected to their best-hits in other genomes 60 with edges. Edge property includes co-linearity information between the two nodes being connected. islam makhachev wallpaper